Yo guys, having a few problems that I never encountered before.
I bought Adana back from Saquesh, then I killed him, did most of the encounters in the refugee sector and once I get back to the central place I get the cutscene where the Red Eclipse takes over my ship, takes the guy who wanted the Ebon Hawk back earlier as prisoner and once I board the ship I have to fight Visas. Afterwards I am not able to take Bao-Dur and Handmaiden into the party again (had them with me before boarding the ship).
Any way to salvage this with KSE or am I focked?
(Using TSLRCM, but once again, never encountered this before)

Thanks 4 input <3