This is a List of All Clones from the Star Wars: The Clone Wars TV Show. I Will Also Try to Include Some Characters from Star Wars the Clone Wars: Republic Heroes and Clone Wars Adventures. If I Miss Any/ You Think I Should List A Character, Comment Below.

Phase 1:
-501st Legion
--CT-7567 Captain Rex
--CT-5597 Jesse
--CT-???? Denal
--CS-1004 Kano
--CS-2207 ARF Boomer
--CT-???? Hardcase
--CT-6116 Kix
--CT-???? Redeye
--CT-???? Mixer
--CT-1409 Echo
--CT-5555 Fives
--CT-???? Pilot Hawk
--501st Trooper
--501st Medic
-212th Legion
--CC-2224 Commander Cody
--CT-???? Waxer
--CT-???? Boil
--CT-???? Crys
--CT-???? Pilot Oddball (Davijaan)
--212th Trooper
--212th Medic
-41st Legion
--CC-1004 Commander Gree
--CT-???? Draa
--CT-???? Buzz
--41st Trooper
--41st Medic
-104th Legion (Wolfpack)
--CC-3636 Commander Wolffe
--CS-???? Sinker
--CT-???? Boost
--CT-???? Comet
--CT-???? Pilot Warthog
--104th Trooper
--104th Medic?
-91st Legion
--CC-6454 Commander Ponds
--Standard Clone Trooper
--ARF Trooper
-Commander Fil's Unit (Undetermined Legion)
--CC-3714 Commander Fil
--Fil's Trooper
-Captain Keeli's Unit (Undetermined Legion)
--CT-???? Captain Keeli
--Keeli's Trooper
--Keeli's ARF Trooper
-327th Legion
--CC-5052 Commander Bly
--Standard Clone Trooper
-Commander Jet's Unit (Undetermined Legion)
--CC-1993 Commander Jet
--Jet's Trooper
--Flamethrower Trooper
-Horn Company (Undetermined Legion)
--CC-4142 Captain Lock
--Horn Company Trooper
-Coruscant Guard
--CC-1010 Commander Fox
--CC-4477 Commander Thire
--CC-5869 Commander Stone
--CT-???? Jek
--CT-???? Rys
--Senate Security Trooper
--Coruscant Guard Trooper
-Tango Company (Undetermined Legion)
--CL-9632 Lieutenant Trap
--CS-9521 Pulsar
--CT-9538 Edge
--CT-9529 Havoc
--CT-9544 Scythe
--CT-???? Ox
-Anti-Hailfire Droid Squad (Undetermined Legion)
--Tank Gunner Commander
--AHD Aerial Recon Trooper
--AHD Trooper
-Kamino Troopers (Undetermined Legion)
--Kamino ARF Trooper
-Blue Squadron (Pilot Squad, 501st Legion)
--CT-???? Axe
--CT-???? Slammer
--CT-???? Kickback
--CT-???? Tucker
--CT-???? Swoop
-Misc. Troopers
--Standard Clone Trooper
--Bomb Squad Trooper
--ARF Trooper
--Tank Gunner Trooper
--Clone Pilot
--AT-TE Driver
--Clone Cadet
--Clone Naval Officer
--Snow Trooper

Phase 2
-501st Legion
--CT-7567 Captain Rex
--CT-5597 Jesse
--CT-???? Hardcase
--CT-???? Kix
--CT-???? Pilot Hawk
--CS-1119 Appo
--CT-???? Tup
--CT-???? Dogma
--501st Trooper
--501st Medic
-212th Legion
--CC-2224 Commander Cody
--CT-???? Waxer
--CT-???? Boil
--212th Trooper
--212th Medic
-104th Legion
--CC-3636 Commander Wolffe
--CS-???? Sinker
--CT-???? Boost
--CT-???? Comet
--CT-???? Pilot Warthog
--104th Trooper
-91st Legion
--CC-8826 Commander Neyo
--91st Trooper
-Coruscant Guard
--CC-1010 Commander Fox
--CC-???? Commander Thorn
--CS-???? ARF Hound
--Shock Trooper
-Doom's Unit (Undetermined Legion)
--CC-???? Commander Doom
--Doom's Trooper
-Kaminoan Security (Undetermined Legion)
--Unknown Kaminoan Security Commander
--Kaminoan Security Trooper
-ARC Troopers
--ARC-???? Commander Colt
--ARC-???? Commander Havoc
--ARC-???? Commander Blitz
--ARC-1409 Echo
--ARC-5555 Fives
--ARC-5597 Jesse
-SCUBA Troopers
--CC-???? Commander Monnk
--SCUBA Trooper
-Trauma's Unit
--CC-???? Commander Trauma
--ARF Trooper
-Misc. Troopers
--Clone Pilot
--Clone Trooper

Clone Commando's
-Foxtrot Group
--CC-5576-39 Captain Gregor
-Delta Squad
--RC-1138 Sergeant Boss
--RC-1140 Fixer
--RC-1262 Scorch
--RC-1207 Sev