ill sink them further into the roads then. I have not had a problem with them yet but ill try to fix this. its just i want 4 way intersections and straighter forks. The only way i can tell to get this to work is as you said uncapped roads put on the same Y axis.

Just so you know, the roads are uncapped which can cause collision issues (eg, people phasing through tracks at the ends of them if they hit at the wrong angle).

If you select the red track manipulator nodes at the end of the tracks, then choose a 'NitronicSidelessRoadEnd' object from the roads/echoes folder, that will add a themed end cap to the road that covers the 'hole' in the end of the road and prevents the collision issues. Might need to adjust track position slightly to account for the length.

You'd use the 'EmpireRoadCap' end or one of the empire themed ends for normal roads as the roads have a different shape, so the plug for one doesn't fit the others right.