How to use console commands to spawn beacons:
I used a very simple naming system for the beacons in the mod. I simply added "_Child_EGB" to the end.

The vanilla names can be found here on this wiki page:
https://ark.gamepedia.com/Beacon_IDs

however the "_C" at the end is not in the files I touched, so either the vanilla commands still work or you can add "_C" after my naming system.

So if the vanilla command is:
admincheat summon SupplyCrate_Level03_C

The End Game Beacons command should be:
admincheat summon SupplyCrate_Level03_Child_EGB_C

I have not tested this so I don't know for sure if this works. Just giving the best info I can, let us know if it does or if you know the right way to this.

All the crates except artifact crates and the Ragnarok crate in the wiki link above were changed in this mod, so I'm not going to list them all here. Just look for what you want and rename it as I showed you.