Bots can't get into the command room. They stop on the ladder up into it. I recommend checking over all waypoints if you can, make sure they can reach and repair.

can do

Found a few extra waypoint nodes that hinder bot pathing. The O2 generator room hatch has an extra ladder waypoint in the way. Ditto for the Diving suit locker room on the lower left section of the submarine. And the airlock hatch on the upper right could use some simplification. If those can be fixed up then it's golden for bot support.

Thanks for the heads up. I'll fix asap. I've noticed every update breaks the path finding of bots on my ships one way or another. thank you for letting me know